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Planning a trip to Atlanta?Foursquare can help you find the best places to go to. (Now Closed)TaxiGeorgia Tech, AtlantaSaveShareTipsStingeretteNo tips and reviewsLog in to leave a tip here.No tips yetWrite a short note about what you liked, what to order, or other helpful advice for visitors.0 PhotoRelated Searchesstingerette atlanta • stingerette atlanta photos • stingerette atlanta location • stingerette atlanta address • stingerette atlanta • stingerette atlanta • stingerette georgia tech atlantaAboutBlogBusinessesCitiesDevelopersHelpCareersCookiesPrivacyYour Privacy ChoicesTermsEnglishEnglish Français Deutsch Bahasa Indonesia Italiano 日本語 한국어 Português Русский Español ภาษาไทย Türkçe Cities:AtlantaAustinBostonChicagoDallasDenverHoustonLas VegasLos AngelesNew YorkPhiladelphiaPortlandSan DiegoSan FranciscoSeattleWashington, D.C.Countries:BelgiumBrazilCanadaChileFinlandFranceGermanyGreat BritainHungaryIndonesiaJapanMexicoNetherlandsPhilippinesRussiaSingaporeSpainThailandTurkeyMore Great Places in Atlanta:abcdefghijklmnopqrstuvwxyz#Foursquare © 2025 Lovingly made in NYC, CHI, SEA & LAStingeretteFerst DriveAtlanta, GA 30318United StatesGet directions See MoreUnited States » Georgia » Fulton County » Atlanta » Georgia TechTravel and Transportation » Transportation Service » TaxiIs this your business? Claim it now.Make sure your information is up to date. Plus use our free tools to find new customers.

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Note: This repo contains the code for the training phase of GeneMarkS-2 only. To download and use the complete program, please visit topaz.gatech.eduGeneMarkS-2Article Name: Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.Authors: Alex Lomsadze^, Karl Gemayel^, Shiyuyun Tang and Mark BorodovskyAffiliation: Georgia Institute of TechnologyGroup Website: topaz.gatech.eduPubMed: www.ncbi.nlm.nih.gov/pubmed/29773659/InstallStructure: GeneMarkS-2 is made up of four components:gms2.pl : Controls the entire GeneMarkS-2 algorithmbiogem : Implements the training stages of GeneMarkS-2gmhmmp2 : Implements the prediction stages of GeneMarkS-2compp : Used for checking for convergence by comparing consecutive prediction filesSee the INSTALL file for more detail.ExecutionTo run GeneMarkS-2, simply execute the perl script 'gms2.pl' by invoking 'perl gms2.pl'.This will print out the usage message showing all possible input parameters (see below).GeneMarkS-2 with its default parameters can be run by:perl gms2.pl -s sequence.fasta --genome-type TYPE --output OUTWhere 'sequence.fasta' is the FASTA file containing the sequence.And TYPE is bacteria, archaea or auto (auto detection of domain)UsageUsage: gms2.pl --seq SEQ --genome-type TYPEBasic Options:--seq File containing genome sequence in FASTA format--genome-type Type of genome: archaea, bacteria, auto (default: auto)--gcode Genetic code (default: auto. Supported: 11, 4, 25 and 15)--output Name of output file (default: gms2.lst)--format Format of output file (default: lst)--ext Name of file with external information in GFF format (PLUS mode of GMS2)--fnn Name of output file that will hold nucleotide sequences of predicted genes--faa Name of output file that will hold protein sequences of predicted genes--gid Change gene ID format--species Name of the species to use inside the model file (default: unspecified)--advanced-options Show the advanced optionsVersion: 1.14_1.24_licGeneMarkS-2 OtputGeneMarkS-2 uses GeneMark.hmm-2 as a core gene finder.Final output is generated by GeneMark.hmm-2.GeneMark.hmm-2 OutputCoordinates of predicted genes can be saved in GFF, GTF, GFF3 and LST formats.LST format is custom human readable format developed at GaTech for GeneMark.hmm.LST is default output format in GeneMark.hmm-2.GFF, GTF and GFF3 formats were developed and have been widely used for description of genes in eukaryotic species.These formats are not yet widely adopted for gene description of prokaryotic species. Almost all prokaryotic gene findersuse by default custom formats and also support one or another variant of GFF format with gene finder specific modifications.GTF and GFF3 are formats derived from original GFF format.GFF, GTF and GFF3 formats use similar 8 first mandatory columns.Deviation from standard in GeneMark.hmm-2 in first 8 columns:Incomplete CDS can be present in genomes due to gaps in sequence assembly or linearization of circular chromosome. Most frequently incomplete CDSi's are found at the beginning or at the end of the contig. Incomplete CDS's predicted by GeneMark.hmm-2 always start and end with full codon. Thus, all predicted CDS in GFF* formats will have phase zero. For example, these three lines describe incomplete gene on direct (plus) strand